Follow

Keep Up to Date with the Most Important News

By pressing the Subscribe button, you confirm that you have read and are agreeing to our Privacy Policy and Terms of Use
Contact

count co-occurrences of values in dataframe r

I have a sample data frame as follows and I need to explore the Category column.

> df
  Id  Category
  1 [1,2,3,4]
  2   [2,3,5]
  3   [1,4,5]
  4   [1,2,5]
  5       [4]
  6   [2,3,5]
  7     [1,5]

In reality, there are thousands of rows in the data frame with categories between 1 to 25. I want to see how many times these categories co-occurred in that column. The output should be as a matrix or data frame.

Matrix Output:

MEDevel.com: Open-source for Healthcare and Education

Collecting and validating open-source software for healthcare, education, enterprise, development, medical imaging, medical records, and digital pathology.

Visit Medevel

     [,1] [,2] [,3] [,4] [,5]
[1,]    0    2    1    2    3
[2,]    2    0    3    1    3
[3,]    1    3    0    1    2
[4,]    2    1    1    0    1
[5,]    3    3    2    1    0

Dataframe Output:

     C1 C2     Count
     1  2      2
     1  3      1
     1  4      2
     1  5      3
     2  3      3
     2  4      1
     2  5      3
     3  4      1
     3  5      2
     4  5      1

Can anybody help me in this regard?

>Solution :

another option:

df %>%
  group_by(Id) %>%
  mutate(Category = list(reticulate::py_eval(Category))) %>%
  unnest(Category) %>%
  table()  %>%
  crossprod() %>%
  as.data.frame.table() %>%
  filter(Category!=Category.1)

   Category Category.1 Freq
1         2          1    2
2         3          1    1
3         4          1    2
4         5          1    3
5         1          2    2
6         3          2    3
7         4          2    1
8         5          2    3
9         1          3    1
10        2          3    3
11        4          3    1
12        5          3    2
13        1          4    2
14        2          4    1
15        3          4    1
16        5          4    1
17        1          5    3
18        2          5    3
19        3          5    2
20        4          5    1
Add a comment

Leave a Reply

Keep Up to Date with the Most Important News

By pressing the Subscribe button, you confirm that you have read and are agreeing to our Privacy Policy and Terms of Use

Discover more from Dev solutions

Subscribe now to keep reading and get access to the full archive.

Continue reading