Good evening,
I have to perform a loop through a directory that contains files with the following scheme:
P1_1.fq.gz, P1_2.fq.gz
P2_1.fq.gz, P2_2.fq.gz
...
P10_1.fq.gz, P10_2.fq.gz
The purpose is take "one line" at a time. For example, in one iteration I must take the first two file and operate on them. Then, take the others two and so on.
How can I loop considering the numbers ? I think It will be something like this:
for i in {1..10}; do echo P$i_1.fq.gz; done
I have some problems on how can I take couples and not one file, and with the sintax regarding the letters after the $i variable, since I am not so expert with bash scripts.
Can someone help me, please? I would really appreciate.
Thank you very much. I am avaiable for quick response.
>Solution :
The _1 will be part of your variable this way. The solution is to explicitly tell bash what the variable is:
for i in {1..10}; do
echo '------------------'
echo P${i}_1.fq.gz
echo P${i}_2.fq.gz
done