I want to pivot multiple sets of variables in a data frame. My data looks like this:
require(dplyr)
require(tidyr)
x_1=rnorm(10,0,1)
x_2=rnorm(10,0,1)
x_3=rnorm(10,0,1)
y_1=rnorm(10,0,1)
y_2=rnorm(10,0,1)
aid=rep(1:5,2)
data=data.frame(aid, x_1,x_2,y_1,y_2)
> data
aid x_1 x_2 y_1 y_2
1 1 -0.82305819 0.9366731 0.95419200 2.29544019
2 2 0.64424320 -0.2807793 0.51303834 0.02560463
3 3 -1.11108822 -0.2475625 0.05747951 -0.51218368
4 4 -1.04026895 -0.4138653 0.57751999 0.60942652
5 5 1.29097040 -1.7829966 1.59940532 0.75868562
6 1 -0.57845406 -1.0002074 0.04302291 0.86766265
7 2 0.08996163 -0.7949632 -2.10422124 -0.43432995
8 3 0.14331978 0.4203010 -1.12748270 0.14484670
9 4 -0.25207187 1.5559295 0.23621422 -0.04719046
10 5 -0.25617731 0.6241852 -1.21131110 1.02236458
I want to pivot x and y variables separately. I did that using following lines of codes.
data2 = data %>% reshape(.,direction = "long",
varying = list(c('x_1','x_2'),
c('y_1','y_2')),
v.names = c("x",'y'))
I need to generalize this to any number of columns. That means, in this example x and y have 2 columns each. But for a another data set it may be different. If there are more columns, it would be difficult to type everything under varying parameter.
In order to avoid specifying the columns when pivoting, I tried this code:
data1 <- data%>% pivot_longer(!aid, names_to = c("id"), names_pattern = "(.)(.)")
But it gave this error:
Error: `regex` should define 1 groups; found.
Can anyone help me to fix this?
Thank you.
>Solution :
The brackets around the matched pattern represents that we are capturing that pattern as a group. In the below code, we capture one or more lower-case letters ([a-z]+) followed by a _ (not inside the brackets, thus it is removed) and the second capture group matches one or more digits (\\d+), and this will be matched with the corresponding values of names_to – i.e. .value represents the value of the column, thus we get the columns ‘x’ and ‘y’ with the values and the second will be a new column names that returs the suffix digits of the column names i.e. ‘time’
library(tidyr)
pivot_longer(data, cols = -aid, names_to = c(".value", "time"),
names_pattern = "^([a-z]+)_(\\d+)")
-output
# A tibble: 20 × 4
aid time x y
<int> <chr> <dbl> <dbl>
1 1 1 -0.823 0.954
2 1 2 0.937 2.30
3 2 1 0.644 0.513
4 2 2 -0.281 0.0256
5 3 1 -1.11 0.0575
6 3 2 -0.248 -0.512
7 4 1 -1.04 0.578
8 4 2 -0.414 0.609
9 5 1 1.29 1.60
10 5 2 -1.78 0.759
11 1 1 -0.578 0.0430
12 1 2 -1.00 0.868
13 2 1 0.0900 -2.10
14 2 2 -0.795 -0.434
15 3 1 0.143 -1.13
16 3 2 0.420 0.145
17 4 1 -0.252 0.236
18 4 2 1.56 -0.0472
19 5 1 -0.256 -1.21
20 5 2 0.624 1.02
In the OP’s code, there are two groups ((.) and (.)) and only one element in names_to, thus it fails along with the fact that there is _ between the ‘x’, ‘y’ and the digit. Also, by default, the names_pattern will be in regex mode and some characters are thus in metacharacter mode i.e. . represents any character and not the literal .