I have a two cells in a Jupyter notebook, one which defines a function, and one which executes said function (I’ve provided a simplified function as of now). Currently, I include a bash command within the function to convert this notebook to a html file using nbconvert:
Current output/notebook.ipynb
Cell 1
summary_gen(filepath):
for summary in Path(filepath).rglob('*.txt'):
txt= str(txt)
print(bam)
!jupyter nbconvert "/path/to/this/notebook.ipynb"
Cell 2
Summary_gen("/path/to/file")
- Secondary: 1374881 + 0
- Supplementary: 0 + 0
- Duplicates: 0 + 0
However, although I can output my entire notebook, my goal is to use nbconvert to output a html which only contains the output of the function, meaning when I run the function, I get a html like so:
Desired output
- Secondary: 1374881 + 0
- Supplementary: 0 + 0
- Duplicates: 0 + 0
I think this is possible using some form of:
jupyter nbconvert mynotebook.ipynb -TagRemovePreprocessor.enabled=True --TagRemovePreprocessor.remove_cell_tags remove_cell
or even the regex version:
jupyter nbconvert --RegexRemovePreprocessor.patterns="['some_pattern']" mynotebook.ipynb
However, I admit I’m not entirely sure how to tag cells, or if there might be a better solution.
As always any help is appreciated!
>Solution :
You can pass the argument --no-input to hide all the input cells in the output document.
You can just use it as:
jupyter nbconvert --no-input notebook.ipynb
You can also add --no-prompt to hide the prompts and have all the cells vertically aligned.
More information of the configurations options in the docs